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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vcl, vinculin
Sequence ID:NM_009502
Entrez Gene ID:22330
Ensembl ID:ENSMUSG00000021823

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14 A3|14 2.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:14: 21029321 - 21033427

 Exon Info From UCSC:
NM_009502

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3495710Full LengthBC008520vinculin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033528  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009502 NP_033528 Q64727 Vinculin

Related Sequences

 
mRNAGenPeptSwissProt
L18880 AAB96843 Q64727
BC008520 AAH08520 Q64727
BC008554 AAH08554 Q64727
AB041262 BAB16378 Q9ESQ3
AK035184 BAC28973 Q64727
AK077850 BAC37033 Q64727

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vcl NP_033528 R.norvegicus Vcl 305679   NP_001100718 100
H.sapiens VCL 7414 Gene Info NP_054706 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta