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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Sox17, SRY-box containing gene 17
Sequence ID:NM_011441
Entrez Gene ID:20671
Ensembl ID:ENSMUSG00000025902

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 A1|1 7.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 4490927 - 4496413

NM_011441 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016271Full LengthBC153021SRY-box containing gene 17
100015412BC148437SRY-box containing gene 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035571  

Protein Infomation

NM_011441 NP_035571 Q61473 HMG_box

Related Sequences

L29085 AAA56843 Q61473
BC060612 AAH60612 Q6P9T1
BC148437 AAI48438  
BC153021 AAI53022  
D49473 BAA08443 Q61473
D49474 BAA08444 Q61473
AK004781 BAB23559 Q61473

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Sox17 NP_035571 R.norvegicus Sox17 312936   NP_001101372 96
H.sapiens SOX17 64321 Gene Info NP_071899 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)