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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rrh, retinal pigment epithelium derived rhodopsin homolog
Sequence ID:NM_009102
Entrez Gene ID:20132
Ensembl ID:ENSMUSG00000028012

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 G3|3 67.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 129808800 - 129822503

NM_009102 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14485129511492129511963
486664129513443129513621
665833129514528129514696
834987129515525129515678
9881087129516167129516266
10881278129518477129518667
12791407129525294129525422

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6468540Full LengthBC046288retinal pigment epithelium derived rhodopsin homolog

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033128  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009102 NP_033128 O35214
Q543W9
7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
AF012271 AAC53344 O35214
Q543W9
BC046288 AAH46288 Q80XL3
AK021379 BAB32391 Q9D1T9
AK044717 BAC32047 O35214
Q543W9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rrh NP_033128 R.norvegicus Rrh 310869   NP_001101196 83
H.sapiens RRH 10692 Gene Info NP_006574 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)