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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Srebf1, sterol regulatory element binding transcription factor 1
Sequence ID:NM_011480
Entrez Gene ID:20787
Ensembl ID:ENSMUSG00000020538

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 60204431 - 60207225

 Exon Info From UCSC:
NM_011480

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6824948Full LengthBC056922sterol regulatory element binding transcription factor 1
3590844IncompleteBC006051sterol regulatory element binding transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035610  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011480 NP_035610 Q9WTN3 HLH

Related Sequences

 
mRNAGenPeptSwissProt
BC006051 AAH06051 Q9WTN3
BC056922 AAH56922 Q9WTN3
AF374266 AAK54762 Q9WTN3
AB017337 BAA74795 Q9WTN3
AK052628 BAC35068 Q9WTN3
AK150052 BAE29268 Q9WTN3
AK154424 BAE32576 Q9WTN3
AK158269 BAE34440 Q3TYX1
AK169607 BAE41256 Q9WTN3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Srebf1 NP_035610 R.norvegicus Srebf1 78968   XP_213329 95
H.sapiens SREBF1 6720 Gene Info NP_001005291 81
A.gambiae AgaP_AGAP000076 1272195   XP_311076 39
D.melanogaster HLH106 40155   NP_524166 35
C.elegans sbp-1 176574   NP_499472 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta