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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Exosc5, Exosome component 5
Sequence ID:NM_138586
Entrez Gene ID:27998
Ensembl ID:ENSMUSG00000061286

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A3|7 6.0

Chromosomal Position (from UCSC)

Chromosomal Position:7: 25659201 - 25668023

NM_138586 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12312644417126444401
2323452644815526448268
3464672644934526449466
4686082645043926450579
6096982645127126451360
69910302645271826453049

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2651418Full LengthBC034358exosome component 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_613052  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_138586 NP_613052 Q9CRA8 RNase_PH
RNase_PH_C

Related Sequences

 
mRNAGenPeptSwissProt
BC034358 AAH34358 Q9CRA8
AK006475 BAB24607 Q9CRA8
AK007372 BAB24993 Q9CRA8
AK155228 BAE33136 Q3U2K4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Exosc5 NP_613052 R.norvegicus Exosc5 308441   NP_001100963 98
H.sapiens EXOSC5 56915 Gene Info NP_064543 89
A.thaliana AT3G46210 823766   NP_001030817 41
D.melanogaster Rrp46 41270   NP_650001 38
A.gambiae AgaP_AGAP002177 1269378   XP_308011 36
C.elegans crn-5 174634   NP_496284 32
N.crassa NCU03268 3880570   XP_964421 32
S.cerevisiae RRP46 852987   NP_011609 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)