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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Slc9a3r1, Solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
Sequence ID:NM_012030
Entrez Gene ID:26941
Ensembl ID:ENSMUSG00000020733

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 115163340 - 115181178

NM_012030 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1611115024654115025264
612773115037664115037825
774927115038537115038690
928968115040363115040403
9691058115041320115041409
10591922115041628115042491

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6413140Full LengthBC085141solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036160  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012030 NP_036160 P70441
Q3TG37
PDZ

Related Sequences

 
mRNAGenPeptSwissProt
BC085141 AAH85141 P70441
Q3TG37
AK040371 BAC30573 P70441
AK153558 BAE32094 P70441
Q3TG37
AK168894 BAE40711 P70441
Q3TG37

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc9a3r1 NP_036160 R.norvegicus Slc9a3r1 59114   NP_067605 95
H.sapiens SLC9A3R1 9368 Gene Info NP_004243 88
C.elegans tag-60 177736   NP_001040908 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta