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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ubxn1, UBX domain protein 1
Sequence ID:NM_146093
Entrez Gene ID:225896
Ensembl ID:ENSMUSG00000071655

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 8871592 - 8875863

NM_146093 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12789460488946074
2811389461608946245
11416789463488946401
16827489464978946603
27534489467078946776
34553689480038948194
53758889482848948335
58970589486288948744
70689889496498949841
899103389500118950145

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3583916Full LengthBC006701UBX domain protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666205  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_146093 NP_666205 Q922Y1 UBA
UBX

Related Sequences

 
mRNAGenPeptSwissProt
BC006701 AAH06701 Q922Y1
AK150442 BAE29564 Q922Y1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ubxn1 NP_666205 R.norvegicus Ubxn1 293719   NP_001030001 96
H.sapiens UBXN1 51035 Gene Info NP_056937 92
D.melanogaster CG8209 38888   NP_648167 44
A.gambiae AgaP_AGAP009841 1279259   XP_318954 43
C.elegans ubxn-1 171804   NP_490978 35
S.pombe SPAC17C9.11c 2542167   NP_594595 33
N.crassa NCU08955 3876830   XP_960679 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)