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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stx16, syntaxin 16
Sequence ID:NM_001102423
NM_001102424
NM_001102425
NM_172675
Entrez Gene ID:228960
Ensembl ID:ENSMUSG00000027522

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H4|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 174098089 - 174099770

 Exon Info From UCSC:
NM_001102423
NM_001102424
NM_001102425
NM_172675

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861564Full LengthBC138544syntaxin 16
30682952IncompleteBC094436syntaxin 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766263  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001102423 NP_001095893    
NM_001102424 NP_001095894    
NM_001102425 NP_001095895    
NM_172675 NP_766263 Q8BVI5
Q8C0W8
Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
BC094436 AAH94436 Q0VGN4
BC138544 AAI38545 Q8C0W8
AK029571 BAC26518 Q8C0W8
AK078110 BAC37129 Q8BVI5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stx16 NP_001095893 R.norvegicus Stx16 362283   NP_001102080 96
H.sapiens STX16 8675 Gene Info NP_001128244 94
D.melanogaster Syx16 33034   NP_523420 44
N.crassa NCU04119 3877439   XP_961275 37
A.thaliana SYP41 832756   NP_001031950 35
C.elegans syn-16 175712   NP_498105 35
A.thaliana SYP43 819740   NP_566256 34
A.thaliana SYP42 827505   NP_567223 33
S.pombe tlg2 2543436   NP_593832 31
S.cerevisiae TLG2 854142   NP_014624 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)