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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col1a2, collagen, type I, alpha 2
Sequence ID:NM_007743
Entrez Gene ID:12843
Ensembl ID:ENSMUSG00000029661

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 A1|6 0.68 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 4540515 - 4541007

 Exon Info From UCSC:
NM_007743

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3487477Full LengthBC007158collagen, type I, alpha 2
3586272Full LengthBC042503collagen, type I, alpha 2
3481648IncompleteBC012438collagen, type I, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031769  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007743 NP_031769 Q01149 Collagen
COLFI

Related Sequences

 
mRNAGenPeptSwissProt
BC007158 AAH07158 Q01149
Q3TX57
BC012438 AAH12438 Q91VL4
BC042503 AAH42503 Q01149
Q3TX57
AK132496 BAE21203 Q01149
Q3TX57
AK159408 BAE35059 Q01149
Q3TX57
AK160787 BAE36010 Q01149
Q3TX57
AK160788 BAE36011 Q01149
Q3TX57
AK160790 BAE36013 Q01149
Q3TX57
AK160814 BAE36029 Q3TUE2
AK160946 BAE36107 Q3TU64
AK161017 BAE36150 Q01149
Q3TX57
AK161605 BAE36488 Q01149
Q3TX57
AK164628 BAE37849 Q3TP88
AK164808 BAE37930 Q01149
Q3TX57
X58251 CAA41205 Q01149

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col1a2 NP_031769 R.norvegicus Col1a2 84352   NP_445808 96
H.sapiens COL1A2 1278 Gene Info NP_000080 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)