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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col1a1, collagen, type I, alpha 1
Sequence ID:NM_007742
Entrez Gene ID:12842
Ensembl ID:ENSMUSG00000001506

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11 56.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 94936254 - 94951847

 Exon Info From UCSC:
NM_007742

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3992363Full LengthBC059281collagen, type I, alpha 1
4225038Full LengthBC050014collagen, type I, alpha 1
3586143IncompleteBC003198collagen, type I, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031768  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007742 NP_031768 P11087 VWC
Collagen
COLFI

Related Sequences

 
mRNAGenPeptSwissProt
U03419 AAA03475 Q60785
M14423 AAA37333 P11087
U08020 AAA88912 P11087
BC003198 AAH03198 Q99LL6
BC050014 AAH50014 P11087
BC059281 AAH59281 P11087

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col1a1 NP_031768 R.norvegicus Col1a1 29393   NP_445756 98
H.sapiens COL1A1 1277 Gene Info NP_000079 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)