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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Arap1, ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
Sequence ID:NM_001040111
NM_001040112
NM_027180
NM_198096
Entrez Gene ID:69710
Ensembl ID:ENSMUSG00000032812

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 F1

Chromosomal Position (from UCSC)

Chromosomal Position:7: 101372992 - 101411321

 Exon Info From UCSC:
NM_001040111
NM_001040112
NM_027180
NM_198096

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055791Full LengthBC141179ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
5052745IncompleteBC091762ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
5101122IncompleteBC057922ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
5148694IncompleteBC069849centaurin, delta 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081456  NP_932764  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001040111 NP_001035200    
NM_001040112 NP_001035201    
NM_027180 NP_081456   PH
RhoGAP
RA
ArfGap
NM_198096 NP_932764   PH
RhoGAP
RA

Related Sequences

 
mRNAGenPeptSwissProt
BC057922 AAH57922 Q4LDD4
BC091762 AAH91762 Q4LDD4
BC141179 AAI41180 Q4LDD4
AK010344 BAB26867 Q9CRJ3
AK129213 BAC98023 Q4LDD4
AK137455 BAE23358 Q4LDD4
AK140646 BAE24434 Q4LDD4
AK150132 BAE29329 Q4LDD4
AJ621558 CAF21318 Q4LDD4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arap1 NP_001035200 R.norvegicus Arap1 361617   XP_341896 97
H.sapiens ARAP1 116985 Gene Info NP_001035207 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta