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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Stub1, STIP1 homology and U-Box containing protein 1
Sequence ID:NM_019719
Entrez Gene ID:56424
Ensembl ID:ENSMUSG00000039615

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 11.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 25830636 - 25832908

NM_019719 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13752596758025967954
3764922596804625968162
4935492596825325968309
5506372596848825968575
6388032596874025968905
80410022596899025969188
100316722596963625970305

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2598940Full LengthBC038939STIP1 homology and U-Box containing protein 1
4191866Full LengthBC027427STIP1 homology and U-Box containing protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062693  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019719 NP_062693 Q9WUD1 TPR_1
U-box

Related Sequences

 
mRNAGenPeptSwissProt
AF129086 AAD33401 Q9WUD1
BC027427 AAH27427 Q9WUD1
BC038939 AAH38939 Q9WUD1
AK002752 BAB22329 Q9WUD1
AK004464 BAB23315 Q9WUD1
AK045776 BAC32489 Q9WUD1
AK158595 BAE34573 Q3TYJ0
AK166630 BAE38905 Q9WUD1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stub1 NP_062693 R.norvegicus Stub1 287155   NP_001020796 99
H.sapiens STUB1 10273 Gene Info NP_005852 98
A.gambiae AgaP_AGAP008918 1279886   XP_319666 58
D.melanogaster CHIP 34433   NP_477441 58
C.elegans chn-1 172303   NP_491781 44
A.thaliana CHIP 819925   NP_566305 35
N.crassa NCU10270 5847940   XP_001728535 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)