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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Specc1l, Sperm antigen with calponin homology and coiled-coil domains 1-like
Sequence ID:NM_001145826
NM_153406
Entrez Gene ID:74392
Ensembl ID:ENSMUSG00000033444

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 75212389 - 75312373

 Exon Info From UCSC:
NM_001145826
NM_153406

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4194868Full LengthBC037464cytospin A
6408832Full LengthBC072595cytospin A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_700455  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145826 NP_001139298    
NM_153406 NP_700455 Q6GQV8
Q2KN98
CH

Related Sequences

 
mRNAGenPeptSwissProt
BC037464 AAH37464 Q8CI53
BC072595 AAH72595 Q6GQV8
AY884297 AAX84188 Q2KN98
AK041543 BAC30980 Q8C9Q9
AK052716 BAC35113 Q8C714
AB093236 BAC41420 Q2KN98

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Specc1l NP_001139298 R.norvegicus Specc1l 361828   NP_001034544 98
H.sapiens SPECC1L 23384 Gene Info NP_001138940 95
A.gambiae AgaP_AGAP002688 1273272   XP_001237450 36
D.melanogaster CG13366 31004   NP_001036254 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)