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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Copb1, coatomer protein complex, subunit beta 1
Sequence ID:NM_033370
Entrez Gene ID:70349
Ensembl ID:ENSMUSG00000030754

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F1|7 53.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 114215561 - 114254619

 Exon Info From UCSC:
NM_033370

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4022216Full LengthBC030837coatomer protein complex, subunit beta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_203534  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_033370 NP_203534 Q9JIF7 Adaptin_N
DUF1606

Related Sequences

 
mRNAGenPeptSwissProt
AF231925 AAF76856 Q9JIF7
BC030837 AAH30837 Q9JIF7
AK149828 BAE29109 Q9JIF7
AK152222 BAE31049 Q9JIF7
AK161544 BAE36453 Q9JIF7
AK172214 BAE42886 Q9JIF7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Copb1 NP_203534 R.norvegicus Copb1 114023   NP_542959 100
H.sapiens COPB1 1315 Gene Info NP_001137533 99
A.gambiae AgaP_AGAP001399 1281778   XP_321735 70
D.melanogaster betaCop 32820   NP_523400 70
C.elegans Y25C1A.5 173656   NP_494441 62
A.thaliana AT4G31490 829276   NP_194877 51
A.thaliana AT4G31480 829275   NP_194876 51
N.crassa NCU04404 3873658   XP_957481 49
S.cerevisiae SEC26 851824   NP_010524 45
S.pombe sec26 2539798   NP_595403 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)