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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rpl11, Ribosomal protein L11
Sequence ID:NM_025919
Entrez Gene ID:67025
Ensembl ID:ENSMUSG00000059291

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D3|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 136049955 - 136053371

NM_025919 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
169135605862135605930
70180135606194135606304
181312135607085135607216
313419135607528135607634
420570135608481135608631
571594135609262135609285

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2647882Full LengthBC025077ribosomal protein L11
4039711Full LengthBC021402ribosomal protein L11
6475559Full LengthBC069896ribosomal protein L11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080195  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025919 NP_080195 Q9CXW4 Ribosomal_L5
Ribosomal_L5_C

Related Sequences

 
mRNAGenPeptSwissProt
BC021402 AAH21402 Q8VC94
BC025077 AAH25077 Q9CXW4
BC069896 AAH69896 Q9CXW4
AK002998 BAB22504 Q9CXW4
AK008422 BAB25660 Q9CXW4
AK011211 BAB27470 Q9CXW4
AK011800 BAB27850 Q9CXW4
AK013923 BAB29059 Q9CXW4
AK088967 BAC40676 Q9CXW4
AK153486 BAE32034 Q9CXW4
AK164445 BAE37793 Q9CXW4
AK169053 BAE40841 Q9CXW4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpl11 NP_080195 H.sapiens RPL11 6135 Gene Info NP_000966 100
R.norvegicus Rpl11 362631   NP_001020910 100
D.melanogaster RpL11 37235   NP_477054 85
C.elegans rpl-11.2 180535   NP_508413 82
C.elegans rpl-11.1 178778   NP_504008 82
A.gambiae AgaP_AGAP011173 1270757   XP_309477 81
S.pombe rpl1102 2539846   NP_595899 74
S.pombe rpl1101 2541591   NP_594150 74
A.thaliana RPL16B 827607   NP_567563 72
A.thaliana AT3G58700 825039   NP_191429 72
A.thaliana AT5G45775 834617   NP_568649 72
A.thaliana RPL16A 818874   NP_850376 72
S.cerevisiae RPL11A 856217   NP_015427 72
S.cerevisiae RPL11B 852976   NP_011599 72
N.crassa NCU02509 3881790   XP_965640 72
P.falciparum PF07_0079 2655123   XP_001349097 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)