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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox10, SRY-box containing gene 10
Sequence ID:NM_011437
Entrez Gene ID:20665
Ensembl ID:ENSMUSG00000033006

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E1|15 46.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 79154930 - 79165240

NM_011437 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
217297898534378987070
173019987898956478989832
199925047899371878994223
250527137899471178994919

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3675437Full LengthBC018551SRY-box containing gene 10
4912940Full LengthBC025171SRY-box containing gene 10
5027211Full LengthBC023356SRY-box containing gene 10
5027211IncompleteBC051058SRY-box containing gene 10

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011437 NP_035567 Q04888  

Related Sequences

 
mRNAGenPeptSwissProt
U66141 AAB49282 Q04888
AF017182 AAB99738 Q04888
AF047043 AAC24564 Q04888
AF047389 AAC24565 O88418
U70441 AAC52859 Q04888
BC018551 AAH18551 Q04888
BC023356 AAH23356 Q04888
BC025171 AAH25171 Q04888
BC051058 AAH51058 Q80V12
AK043220 BAC31498 Q8C916
Z18959 CAA79484 Q04888

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox10 NP_035567 R.norvegicus Sox10 29361   NP_062066 99
H.sapiens SOX10 6663 Gene Info NP_008872 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)