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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atp6v1c1, ATPase, H+ transporting, lysosomal V1 subunit C1
Sequence ID:NM_025494
Entrez Gene ID:66335
Ensembl ID:ENSMUSG00000022295

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15|15 C

Chromosomal Position (from UCSC)

Chromosomal Position:15: 38661956 - 38691863

 Exon Info From UCSC:
NM_025494

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3498388Full LengthBC010217ATPase, H+ transporting, lysosomal V1 subunit C1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079770  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025494 NP_079770 Q9Z1G3
Q9D9Z4
V-ATPase_C

Related Sequences

 
mRNAGenPeptSwissProt
U13839 AAC83084 Q9Z1G3
BC010217 AAH10217 Q9Z1G3
AK006323 BAB24526 Q9D9Z4
AK075779 BAC35953 Q9Z1G3
AB088407 BAC57953 Q9Z1G3
AK151237 BAE30229 Q9Z1G3
AK168914 BAE40727 Q3TG21

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atp6v1c1 NP_079770 R.norvegicus Atp6v1c1 299971   NP_001011992 99
H.sapiens ATP6V1C1 528 Gene Info NP_001686 98
A.gambiae AgaP_AGAP005845 1276512   XP_315870 66
D.melanogaster Vha44 36826   NP_477266 65
A.thaliana DET3 837840   NP_563916 40
S.cerevisiae VMA5 853782   NP_012843 39
N.crassa NCU09897 3874770   XP_958622 38
S.pombe vma5 2543469   NP_593891 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)