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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lsm14a, LSM14 homolog A (SCD6, S. cerevisiae)
Sequence ID:NM_025948
Entrez Gene ID:67070
Ensembl ID:ENSMUSG00000066568

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 B1|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 34345243 - 34371091

 Exon Info From UCSC:
NM_025948

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2655161Full LengthBC031521LSM14 homolog A (SCD6, S. cerevisiae)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025948 NP_080224 Q8K2F8  

Related Sequences

 
mRNAGenPeptSwissProt
BC031521 AAH31521 Q8K2F8
AK003611 BAB22889 Q8K2F8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lsm14a NP_080224 R.norvegicus Lsm14a 361554   NP_001121024 100
H.sapiens LSM14A 26065 Gene Info NP_056393 95
C.elegans car-1 173158   NP_493254 59
D.melanogaster tral 39430   NP_648585 42
A.gambiae AgaP_AGAP006935 1270150   XP_308822 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)