Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ptcd2, pentatricopeptide repeat domain 2
Sequence ID:NM_026873
Entrez Gene ID:68927
Ensembl ID:ENSMUSG00000021650

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D1|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 99319650 - 99344687

NM_026873 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1745100089603100090347
746859100091515100091628
860934100096592100096666
9351048100099906100100019
10491140100102390100102481
11411219100102842100102920
12201337100106617100106734
13381467100109855100109984
14681560100113267100113359
15611675100114518100114632

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3987809Full LengthBC025110pentatricopeptide repeat domain 2
2654214IncompleteBC016563pentatricopeptide repeat domain 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081149  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026873 NP_081149 Q8R3K3 PPR

Related Sequences

 
mRNAGenPeptSwissProt
BC016563 AAH16563 Q8R3K3
BC025110 AAH25110 Q8R3K3
AK004502 BAB23336 Q8R3K3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ptcd2 NP_081149 R.norvegicus Ptcd2 310025   NP_001101118 88
H.sapiens PTCD2 79810 Gene Info NP_079030 74
A.gambiae AgaP_AGAP007206 3290322   XP_565003 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)