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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sod1, superoxide dismutase 1, soluble
Sequence ID:NM_011434
Entrez Gene ID:20655
Ensembl ID:ENSMUSG00000022982

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B5-C3|16 61.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 90220835 - 90226331

NM_011434 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11889022098690221173
1892859022302490223120
2863559022460090224669
3564739022538990225506
4746489022639490226568

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3496016Full LengthBC002066superoxide dismutase 1, soluble
5401293Full LengthBC048874superoxide dismutase 1, soluble
6760550Full LengthBC086886superoxide dismutase 1, soluble

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035564  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_011434 NP_035564 P08228 EC 1.15.1.1 Sod_Cu

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M35725 AAA37518 P08228 EC 1.15.1.1
BC002066 AAH02066 P08228 EC 1.15.1.1
BC048874 AAH48874 P08228 EC 1.15.1.1
BC086886 AAH86886 P08228 EC 1.15.1.1
AK020624 BAB32154 P08228 EC 1.15.1.1
AK077284 BAC36730 P08228 EC 1.15.1.1
AK086878 BAC39756 Q8C355  
X06683 CAA29880 P08228 EC 1.15.1.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sod1 NP_035564 R.norvegicus Sod1 24786   NP_058746 97
H.sapiens SOD1 6647 Gene Info NP_000445 84
C.elegans sod-1 174141   NP_001021956 61
D.melanogaster Sod 39251   NP_476735 61
C.elegans sod-5 173776   NP_494779 60
A.gambiae CUSOD3 1272692   XP_311594 57
A.thaliana CSD1 837405   NP_001077494 57
S.cerevisiae SOD1 853568   NP_012638 56
N.crassa NCU02133 3880431   XP_964291 56
S.pombe sod1 2542128   NP_593163 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta