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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scyl1, SCY1-like 1 (S. cerevisiae)
Sequence ID:NM_023912
Entrez Gene ID:78891
Ensembl ID:ENSMUSG00000024941

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19 6.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 5758426 - 5771401

 Exon Info From UCSC:
NM_023912

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3672524Full LengthBC034519SCY1-like 1 (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_076401  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023912 NP_076401 Q9EQC5 HEAT

Related Sequences

 
mRNAGenPeptSwissProt
AF276514 AAG17393 Q9EQC5
BC034519 AAH34519 Q9EQC5
EF437375 ABS83534 B0LAE0
HM856325 ADT64112  
HM856326 ADT64113  
AK134356 BAE22111 Q9EQC5
AK144134 BAE25720 Q9EQC5
AK145869 BAE26711 Q9EQC5
AK161813 BAE36588 Q9EQC5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scyl1 NP_076401 R.norvegicus Scyl1 293684   NP_001011938 96
H.sapiens SCYL1 57410 Gene Info NP_001041683 92
A.gambiae AgaP_AGAP001091 1278701   XP_318327 52
D.melanogaster yata 43508   NP_651722 51
C.elegans W07G4.3 179789   NP_506259 39
A.thaliana AT2G40730 818668   NP_181605 38
N.crassa NCU04279 3877223   XP_961069 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)