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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tmed3, transmembrane emp24 domain containing 3
Sequence ID:NM_025360
Entrez Gene ID:66111
Ensembl ID:ENSMUSG00000032353

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 E3.1|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 89699207 - 89704989

NM_025360 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17778959404089594816
77810268959760989597857
102713248959958389599880

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5253777Full LengthBC023338transmembrane emp24 domain containing 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079636  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025360 NP_079636 Q78IS1 EMP24_GP25L

Related Sequences

 
mRNAGenPeptSwissProt
BC023338 AAH23338 Q78IS1
AK002698 BAB22292 Q78IS1
AK004545 BAB23361 Q78IS1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tmed3 NP_079636 R.norvegicus Tmed3 300888   NP_001004249 95
H.sapiens TMED3 23423 Gene Info NP_031390 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)