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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pdlim7, PDZ and LIM domain 7
Sequence ID:NM_001114087
NM_001114088
NM_026131
Entrez Gene ID:67399
Ensembl ID:ENSMUSG00000021493

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13|13 B2

Chromosomal Position (from UCSC)

Chromosomal Position:13: 55506773 - 55513434

 Exon Info From UCSC:
NM_001114087
NM_001114088
NM_026131

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6588160Full LengthBC049565PDZ and LIM domain 7
6478831IncompleteBC045528PDZ and LIM domain 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080407  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001114087 NP_001107559    
NM_001114088 NP_001107560 Q3TJD7  
NM_026131 NP_080407   PDZ

Related Sequences

 
mRNAGenPeptSwissProt
BC045528 AAH45528 Q3TJD7
BC049565 AAH49565 Q3TJD7
BC052698 AAH52698 Q8BVJ7
AK003338 BAB22725 Q3TJD7
AK010141 BAB26726 Q3TJD7
AK003019 BAC25017 Q3TJD7
AK077998 BAC37095 Q8BVJ7
AK167476 BAE39558 Q3TJD7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pdlim7 NP_001107560 R.norvegicus Pdlim7 286908   NP_775148 98
H.sapiens PDLIM7 9260 Gene Info NP_005442 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)