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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hmgn1, high mobility group nucleosomal binding domain 1
Sequence ID:NM_008251
Entrez Gene ID:15312
Ensembl ID:ENSMUSG00000040681

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16 C4|16 69.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 96125318 - 96127022

NM_008251 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18309634319496344023
8319539634632996346451
95410049634875996348809
100510349634891796348946
103510649634903896349067
106512009634919696349331

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6490162Full LengthBC088834high mobility group nucleosomal binding domain 1
6515849Full LengthBC083138high mobility group nucleosomal binding domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032277  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008251 NP_032277 P18608 HMG14_17

Related Sequences

 
mRNAGenPeptSwissProt
BC083138 AAH83138 P18608
BC088834 AAH88834 P18608
AK010763 BAC25314 Q8CEW1
X53476 CAA37569 P18608

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hmgn1 NP_032277 R.norvegicus Hmgn1 360704   NP_001013202 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta