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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cnn3, Calponin 3, acidic
Sequence ID:NM_028044
Entrez Gene ID:71994
Ensembl ID:ENSMUSG00000053931

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 G1|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 121426540 - 121458205

NM_028044 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1288121129458121129745
289410121152866121152987
411477121153209121153275
478615121154300121154437
616732121154800121154916
733879121157864121158010
8802003121159999121161122

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6415164Full LengthBC055711calponin 3, acidic
6487559Full LengthBC085268calponin 3, acidic
3603366IncompleteBC005788calponin 3, acidic

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082320  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028044 NP_082320 Q9DAW9 CH
Calponin

Related Sequences

 
mRNAGenPeptSwissProt
BC005788 AAH05788 Q99JN5
BC055711 AAH55711 Q9DAW9
BC085268 AAH85268 Q9DAW9
AK005460 BAB24051 Q9DAW9
AK051628 BAC34697 Q9DAW9
AK159555 BAE35180 Q9DAW9
AK159871 BAE35444 Q9DAW9
AK166578 BAE38867 Q9DAW9
AK167201 BAE39329 Q9DAW9
AK167613 BAE39666 Q9DAW9
AK169021 BAE40817 Q9DAW9
AK169098 BAE40881 Q9DAW9
AK169410 BAE41156 Q9DAW9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cnn3 NP_082320 R.norvegicus Cnn3 54321   NP_062232 99
H.sapiens CNN3 1266 Gene Info NP_001830 98
A.gambiae AgaP_AGAP012304 1280390   XP_320237 41
D.melanogaster Mp20 36468   NP_001014522 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)