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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nup54, nucleoporin 54
Sequence ID:NM_183392
Entrez Gene ID:269113
Ensembl ID:ENSMUSG00000034826

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5|5 E3

Chromosomal Position (from UCSC)

Chromosomal Position:5: 92428020 - 92435091

 Exon Info From UCSC:
NM_183392

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5707888Full LengthBC068114nucleoporin 54

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_183392 NP_899248 Q8BTS4  

Related Sequences

 
mRNAGenPeptSwissProt
BC068114 AAH68114 Q8BTS4
AK087827 BAC40018 Q8BTS4
AK088855 BAC40615 Q8BTS4
AK133841 BAE21878 Q8BTS4
AK162037 BAE36693 Q8BTS4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nup54 NP_899248 R.norvegicus Nup54 53372   NP_059057 99
H.sapiens NUP54 53371 Gene Info NP_059122 96
D.melanogaster Nup54 36360   NP_610783 43
A.gambiae AgaP_AGAP006031 1276703   XP_316078 41
C.elegans npp-1 177836   NP_501770 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)