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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cldn16, claudin 16
Sequence ID:NM_053241
Entrez Gene ID:114141
Ensembl ID:ENSMUSG00000038148

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16|16 B2

Chromosomal Position (from UCSC)

Chromosomal Position:16: 26463472 - 26482749

NM_053241 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14652646322026463684
4665682647427526474377
5697332647757826477742
7349252648128126481472
92611702648260326482847

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40102178Full LengthBC115574claudin 16
40102179Full LengthBC115575claudin 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444471  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053241 NP_444471 Q925N4 PMP22_Claudin

Related Sequences

 
mRNAGenPeptSwissProt
BC115574 AAI15575 Q14BW2
BC115575 AAI15576 Q14BW2
AF323748 AAK49518 Q925N4
AK085268 BAC39406 Q925N4
AK085333 BAC39425 Q925N4
AB009016 BAF80617 Q14BW2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cldn16 NP_444471 R.norvegicus Cldn16 155268   NP_571980 98
H.sapiens CLDN16 10686 Gene Info NP_006571 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)