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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rdh12, retinol dehydrogenase 12
Sequence ID:NM_030017
Entrez Gene ID:77974
Ensembl ID:ENSMUSG00000021123

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12|12 D2

Chromosomal Position (from UCSC)

Chromosomal Position:12: 79208917 - 79222106

NM_030017 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11958030990080310094
1963148031182780311945
3154708031237480312529
4715758031363980313743
5767858031453080314739
7869758031966280319851
97616748032294980323647

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4527851Full LengthBC016204retinol dehydrogenase 12
5364453IncompleteBC067213retinol dehydrogenase 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_084293  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030017 NP_084293 Q8BYK4 adh_short

Related Sequences

 
mRNAGenPeptSwissProt
BC016204 AAH16204 Q8BYK4
AK020927 BAB32258 Q8BYK4
AK039233 BAC30288 Q8BYK4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rdh12 NP_084293 R.norvegicus Rdh12 314264   NP_001101507 91
H.sapiens RDH12 145226 Gene Info NP_689656 86
D.melanogaster CG2070 35706   NP_610308 55
D.melanogaster CG2065 35707   NP_610309 52
D.melanogaster CG2064 35708   NP_610310 52
D.melanogaster CG30495 246651   NP_724589 51
S.pombe SPCC736.13 2539566   NP_587784 41
N.crassa NCU09579 3875837   XP_959690 41
A.thaliana AT4G23420 828441   NP_001190811 39
C.elegans dhs-22 179940   NP_506570 39
A.thaliana AT4G11410 826745   NP_192880 38
A.thaliana AT4G23430 828442   NP_849428 38
S.cerevisiae YOR246C 854420   NP_014889 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)