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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Phf12, PHD finger protein 12
Sequence ID:NM_174852
Entrez Gene ID:268448
Ensembl ID:ENSMUSG00000037791

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B5|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 78018183 - 78026214

 Exon Info From UCSC:
NM_174852

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6400617Full LengthBC043080PHD finger protein 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_777277  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_174852 NP_777277 Q5SPL2 PHD

Related Sequences

 
mRNAGenPeptSwissProt
BC038275 AAH38275 Q8CHY4
BC043080 AAH43080 Q5SPL2
AK053376 BAC35369 Q8BPT4
AK129383 BAC98193 Q5SPL2
AK141796 BAE24837 Q3UR51
AK155354 BAE33212 Q5SPL2
Q3U2C9
AK170155 BAE41602 Q3TDJ9
AK170187 BAE41622 Q3TDH9
AK010807 BAE43222 Q3V456

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Phf12 NP_777277 R.norvegicus Phf12 303274   NP_001013135 98
H.sapiens PHF12 57649 Gene Info NP_001028733 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)