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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Smarcal1, SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Sequence ID:NM_018817
Entrez Gene ID:54380
Ensembl ID:ENSMUSG00000039354

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C3|1 40.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 72583270 - 72633132

 Exon Info From UCSC:
NM_018817

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3992325Full LengthBC029078SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061287  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018817 NP_061287 Q8BJL0 SNF2_N
Helicase_C
HARP

Related Sequences

 
mRNAGenPeptSwissProt
AF088884 AAF24985 Q8BJL0
BC029078 AAH29078 Q8BJL0
AK043129 BAC31469 Q8BJL0
AK077878 BAC37047 Q8BJL0
AK083488 BAC38933 Q8BJL0
AK042332 BAE20630 Q8BJL0
AK154020 BAE32320 Q8BJL0
AK169465 BAE41189 Q8BJL0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smarcal1 NP_061287 R.norvegicus Smarcal1 316477   NP_001101692 89
H.sapiens SMARCAL1 50485 Gene Info NP_001120679 76
C.elegans helicase 175907   NP_498400 43
A.gambiae AgaP_AGAP008426 1277551   XP_317019 43
D.melanogaster Marcal1 33709   NP_608883 42
A.thaliana CHR18 841251   NP_175265 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)