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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Vamp3, vesicle-associated membrane protein 3
Sequence ID:NM_009498
Entrez Gene ID:22319
Ensembl ID:ENSMUSG00000028955

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 E1

Chromosomal Position (from UCSC)

Chromosomal Position:4: 151056129 - 151059030

NM_009498 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11742150421413150423154
17431794150424103150424154
17951953150425025150425183
19542035150430270150430351
20362115150431982150432061

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5690213Full LengthBC060045vesicle-associated membrane protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033524  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009498 NP_033524 P63024 Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
U60961 AAB03490 P63024
BC060045 AAH60045 P63024
AK051272 BAC34586 P63024
AK051691 BAC34723 P63024
AK165947 BAE38479 P63024
AK168413 BAE40328 P63024
AK169056 BAE40844 P63024
AK169087 BAE40871 P63024

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vamp3 NP_033524 R.norvegicus Vamp3 29528   NP_476438 100
H.sapiens VAMP3 9341 Gene Info NP_004772 93
C.elegans snb-1 266648   NP_504688 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)