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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vps41, vacuolar protein sorting 41 (yeast)
Sequence ID:NM_172120
Entrez Gene ID:218035
Ensembl ID:ENSMUSG00000041236

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 A2|13 9.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 18717291 - 18866801

 Exon Info From UCSC:
NM_172120

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8734111Full LengthBC119362vacuolar protein sorting 41 (yeast)
40129814Full LengthBC125299vacuolar protein sorting 41 (yeast)
4242501IncompleteBC023243vacuolar protein sorting 41 (yeast)
5012523IncompleteBC057905vacuolar protein sorting 41 (yeast)
5067983IncompleteBC049916vacuolar protein sorting 41 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_742118  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_172120 NP_742118 Q5KU39 Clathrin

Related Sequences

 
mRNAGenPeptSwissProt
BC023243 AAH23243 Q5KU39
BC049916 AAH49916 Q5KU39
BC057905 AAH57905 Q6PES1
BC119362 AAI19363 Q5KU39
BC125299 AAI25300 Q5KU39
AF327407 AAN73032 Q5KU39
AK051658 BAC34707 Q5KU39
AB028843 BAD88410 Q5KU39
AK162208 BAE36792 Q3TS83
AK164177 BAE37664 Q5KU39

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vps41 NP_742118 R.norvegicus Vps41 306991   NP_001100825 99
H.sapiens VPS41 27072 Gene Info NP_055211 97
A.gambiae AgaP_AGAP009174 1280131   XP_319939 41
A.thaliana VPS41 837340   NP_172297 40
D.melanogaster lt 3355130   NP_001036416 39
N.crassa NCU05902 3875607   XP_959460 36
S.pombe vps41 2542058   NP_593409 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)