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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Irf6, interferon regulatory factor 6
Sequence ID:NM_178083
NM_016851
Entrez Gene ID:54139
Ensembl ID:ENSMUSG00000026638

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H6|1 104.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 193156993 - 193164181

Transcript StartTranscript EndChromosomal Start Chromosomal End
1188194979305194979492
189365194983409194983585
366570194987806194988010
571699194988795194988923
700858194991959194992117
8591251194993632194994024
12521370194994710194994828
13714124194995475194998228

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3592582Full LengthBC008515interferon regulatory factor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058547  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016851 NP_058547 P97431 IRF

Related Sequences

 
mRNAGenPeptSwissProt
U73029 AAB36714 P97431
BC008515 AAH08515 P97431
BC071221 AAH71221 Q6IR14
AK087631 BAC39949 Q8C2Z7
AK143299 BAE25338 P97431
AK143954 BAE25628 P97431
AK149487 BAE28912 Q3UEJ9
AK165707 BAE38347  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Irf6 NP_058547 R.norvegicus Irf6 364081   NP_001102329 99
H.sapiens IRF6 3664 Gene Info NP_006138 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)