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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Trrap, transformation/transcription domain-associated protein
Sequence ID:NM_001081362
Entrez Gene ID:100683
Ensembl ID:ENSMUSG00000045482

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 144851136 - 144859723

 Exon Info From UCSC:
NM_001081362

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2655777IncompleteBC008264transformation/transcription domain-associated protein
5043876IncompleteBC029023transformation/transcription domain-associated protein

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001081362 NP_001074831    

Related Sequences

 
mRNAGenPeptSwissProt
BC029023 AAH29023 Q80YV3
BC050105 AAH50105 Q80YV3
AK029388 BAC26431 Q80YV3
AK147613 BAE28025 Q3UH32
AK167768 BAE39801 Q3TIP5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trrap NP_001074831 H.sapiens TRRAP 8295 Gene Info NP_003487 99
A.gambiae AgaP_AGAP005533 1276216   XP_556172 58
D.melanogaster Nipped-A 35483   NP_001097192 54
N.crassa NCU01379 3877074   XP_960936 32
A.thaliana AT2G17930 816303   NP_179383 31
A.thaliana AT4G36080 829764   NP_680770 31
S.cerevisiae TRA1 856499   NP_011967 31
C.elegans trr-1 174788   NP_001022032 29
S.pombe tra1 2541265   NP_595777 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta