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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Swi5, SWI5 recombination repair homolog (yeast)
Sequence ID:NM_175190
Entrez Gene ID:72931
Ensembl ID:ENSMUSG00000044627

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 B|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 32279066 - 32288062

NM_175190 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
173323213433532134650
3334273213622832136322
4285523213720532137329
5536013214311632143164
6027843214340532143587

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3586619Full LengthBC021748RIKEN cDNA 2900010J23 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780399  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175190 NP_780399 Q8K3D3 DUF1337

Related Sequences

 
mRNAGenPeptSwissProt
BC021748 AAH21748 Q8K3D3
AK013517 BAC25409 Q8K3D3
AK166608 BAE38890 Q8K3D3
AB597964 BAJ25750 Q8K3D3
AB597965 BAJ25751 E3WH32

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Swi5 NP_780399 R.norvegicus Swi5 499779   XP_575112 89
H.sapiens SWI5 375757 Gene Info NP_001035100 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)