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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cox5a, cytochrome c oxidase subunit Va
Sequence ID:NM_007747
Entrez Gene ID:12858
Ensembl ID:ENSMUSG00000000088

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 B|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 57521297 - 57532423

NM_007747 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11845736903857369221
1853015737676257376878
3024235737804757378168
4245475737947557379598
5486925738008857380232

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5372849Full LengthBC034302cytochrome c oxidase, subunit Va

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031773  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007747 NP_031773 P12787 COX5A

Related Sequences

 
mRNAGenPeptSwissProt
BC034302 AAH34302 P12787
AK018723 BAB31369 P12787
X15963 CAA34085 P12787

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cox5a NP_031773 R.norvegicus Cox5a 252934   NP_665726 99
H.sapiens COX5A 9377 Gene Info NP_004246 88
A.gambiae AgaP_AGAP011159 1270770   XP_309490 59
D.melanogaster CoVa 41432   NP_477217 55
C.elegans cco-2 176707   NP_499681 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)