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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Snx5, sorting nexin 5
Sequence ID:NM_001199188
NM_024225
Entrez Gene ID:69178
Ensembl ID:ENSMUSG00000027423

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H1|2 80.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 144254770 - 144259142


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3492262Full LengthBC002242sorting nexin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077187  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001199188 NP_001186117    
NM_024225 NP_077187 Q9D8U8 PX

Related Sequences

 
mRNAGenPeptSwissProt
BC002242 AAH02242 Q9D8U8
AK007676 BAB25180 Q9D8U8
AK029463 BAC26460 Q9D8U8
AK031873 BAC27587 Q9D8U8
AK049129 BAC33558 Q9D8U8
AK078776 BAC37388 Q8C5E7
AK159115 BAE34831 Q3TXT4
AK159904 BAE35468 Q9D8U8
AK167362 BAE39459 Q3TJN6
AK169786 BAE41365 Q9D8U8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snx5 NP_077187 H.sapiens SNX5 27131 Gene Info NP_055241 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)