Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gde1, glycerophosphodiester phosphodiesterase 1
Sequence ID:NM_019580
Entrez Gene ID:56209
Ensembl ID:ENSMUSG00000033917

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 F3

Chromosomal Position (from UCSC)

Chromosomal Position:7: 118689002 - 118705719

NM_019580 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1593125832071125832663
594805125835096125835307
806898125838006125838098
8991004125838549125838654
10051180125842068125842243
11811529125848903125849251

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3601420Full LengthBC003902glycerophosphodiester phosphodiesterase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062526  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_019580 NP_062526 Q9JL56 EC 3.1.4.44 GDPD

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF212860 AAF65232 Q9JL56 EC 3.1.4.44
BC003902 AAH03902 Q9JL56 EC 3.1.4.44
AK005361 BAB23975 Q9JL56 EC 3.1.4.44
AK150807 BAE29870 Q9JL56 EC 3.1.4.44

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gde1 NP_062526 H.sapiens GDE1 51573 Gene Info NP_057725 87
A.gambiae AgaP_AGAP001253 1281919   XP_321897 27
D.melanogaster CG14883 41997   NP_650547 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)