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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Agrn, agrin
Sequence ID:NM_021604
Entrez Gene ID:11603
Ensembl ID:ENSMUSG00000041936

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E2|4 80.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 156179558 - 156197488

 Exon Info From UCSC:
NM_021604

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9087614Full LengthBC150703agrin
3494258IncompleteBC004020agrin
5006620IncompleteBC028992agrin
5030844IncompleteBC094010agrin
5354447IncompleteBC043318agrin
6406621IncompleteBC058651agrin
6408854IncompleteBC059259agrin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067617  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021604 NP_067617   EGF
Kazal_1
Laminin_EGF
Laminin_G_1
SEA
Laminin_G_2
Kazal_2
EGF_2

Related Sequences

 
mRNAGenPeptSwissProt
U84407 AAB52918 O08860
AF294811 AAG02119 Q9ERP2
BC004020 AAH04020 Q99KT4
BC028992 AAH28992 Q8K326
BC043318 AAH43318 Q80V56
BC059259 AAH59259 Q6PCM6
BC094010 AAH94010 Q52L98
BC150703 AAI50704 A2ASQ1
AF190858 AAK71351 Q91XS3
AY914875 AAX09643 Q5EBX5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Agrn NP_067617 R.norvegicus Agrn 25592   NP_786930 94
H.sapiens AGRN 375790 Gene Info NP_940978 82
C.elegans agr-1 3565243   NP_001022152 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta