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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tlr1, toll-like receptor 1
Sequence ID:NM_030682
Entrez Gene ID:21897
Ensembl ID:ENSMUSG00000044827

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 C3.1|5 37.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 64924685 - 64927252

NM_030682 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
124656531607265318536
246625346532139365321461
253525676532390565323937

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055931Full LengthBC141319toll-like receptor 1
9055933Full LengthBC141321toll-like receptor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_109607  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030682 NP_109607 Q9EPQ1 LRR_1
LRRCT
TIR

Related Sequences

 
mRNAGenPeptSwissProt
AF316985 AAG35062 Q9EPQ1
AY009154 AAG37302 Q9EPQ1
BC141319 AAI41320 B9EJ46
BC141321 AAI41322 B9EJ46
AK172870 BAD32148 Q6A0E8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tlr1 NP_109607 R.norvegicus LOC100363038 100363038   XP_002728155 87
H.sapiens TLR1 7096 Gene Info NP_003254 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)