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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Atg16l1, autophagy related 16-like 1 (S. cerevisiae)
Sequence ID:NM_001205391
NM_001205392
NM_029846
Entrez Gene ID:77040
Ensembl ID:ENSMUSG00000026289

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 D|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 87756199 - 87791309


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6813377Full LengthBC049122autophagy-related 16-like 1 (yeast)
5687555IncompleteBC052087autophagy-related 16-like 1 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_084122  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001205391 NP_001192320    
NM_001205392 NP_001192321    
NM_029846 NP_084122 Q8C0J2 WD40
ATG16

Related Sequences

 
mRNAGenPeptSwissProt
BC049122 AAH49122 Q8C0J2
AK005181 BAB23866 Q8C0J2
AK030983 BAC27201 Q8C0J2
AB087879 BAC55090 Q8C0J2
AB087880 BAC55091 Q8C0J2
AB087881 BAC55092 Q8C0J2
AK131120 BAD21370 Q8C0J2
AK155358 BAE33214 Q3TDQ5
AK163246 BAE37254 Q3TQX8
AK170073 BAE41546 Q3TDQ5
AB476646 BAL42358 G9M4M6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atg16l1 NP_084122 R.norvegicus Atg16l1 363278   NP_001102279 98
H.sapiens ATG16L1 55054 Gene Info NP_110430 94
D.melanogaster CG31033 326115   NP_733313 43
A.gambiae AgaP_AGAP002315 1273655   XP_312657 40
C.elegans atg-16.1 180717   NP_508768 36
A.thaliana AT5G50230 835088   NP_199834 32
C.elegans atg-16.2 174067   NP_495299 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)