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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Zgpat, zinc finger, CCCH-type with G patch domain
Sequence ID:NM_001048148
NM_144894
Entrez Gene ID:229007
Ensembl ID:ENSMUSG00000027582

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H4|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 181364927 - 181380782

 Exon Info From UCSC:
NM_001048148
NM_144894

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3158198Full LengthBC027218zinc finger, CCCH-type with G patch domain
5351756Full LengthBC021513zinc finger, CCCH-type with G patch domain
3158197IncompleteBC004646zinc finger, CCCH-type with G patch domain
5364834IncompleteBC034599zinc finger, CCCH-type with G patch domain

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_659143  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001048148 NP_001041613    
NM_144894 NP_659143 Q8VDM1 zf-CCCH
G-patch

Related Sequences

 
mRNAGenPeptSwissProt
BC004646 AAH04646 Q05DS2
BC021513 AAH21513 Q8VDM1
BC027218 AAH27218 Q8VDM1
AK041491 BAC30962 Q8VDM1
AK049764 BAC33909 Q8VDM1
AK052236 BAC34894 Q8VDM1
AK159801 BAE35381 Q8VDM1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Zgpat NP_001041613 R.norvegicus Zgpat 296478   NP_001009656 96
H.sapiens ZGPAT 84619 Gene Info NP_115916 81
D.melanogaster CG4709 34324   NP_609331 37
A.gambiae ZGPAT_ANOGA 1281359   XP_320928 35
A.thaliana AT2G24830 817020   NP_180056 30
C.elegans C33H5.17 177568   NP_501296 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)