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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Spg21, spastic paraplegia 21 homolog (human)
Sequence ID:NM_138584
Entrez Gene ID:27965
Ensembl ID:ENSMUSG00000032388

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 C|9 40.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 65460946 - 65487209

NM_138584 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12186530874365308960
2193056531307065313156
3064676531658165316742
4685486532144465321524
5496946532364665323791
6958036532818565328293
8049116532966765329774
91210526533224865332388
105326906533463965336276

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30714184Full LengthBC099434spastic paraplegia 21 homolog (human)
40130654Full LengthBC132377spastic paraplegia 21 homolog (human)
40130680Full LengthBC132403spastic paraplegia 21 homolog (human)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_613050  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_138584 NP_613050 Q9CQC8 Abhydrolase_1

Related Sequences

 
mRNAGenPeptSwissProt
BC099434 AAH99434 Q9CQC8
BC132377 AAI32378 A2RT57
BC132403 AAI32404 A2RT57
AK009332 BAB26224 Q9CQC8
AK011985 BAB27958 Q9CQC8
AK090017 BAC41047 Q9CQC8
AK149930 BAE29174 Q9CQC8
AK150215 BAE29385 Q9CQC8
AK150581 BAE29675 Q9CQC8
AK153284 BAE31867 Q9CQC8
AK170666 BAE41947 Q9CQC8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Spg21 NP_613050 R.norvegicus Spg21 300791   NP_001006988 99
H.sapiens SPG21 51324 Gene Info NP_057714 98
A.thaliana AT4G12230 826831   NP_192960 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)