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Gene Info

Gene Information For:Mm. Gabarap, gamma-aminobutyric acid receptor associated protein
Sequence ID:NM_019749
Entrez Gene ID:56486
Ensembl ID:ENSMUSG00000018567

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B4|11 42.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 69991662 - 69994671

NM_019749 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14336980487169805303
4345126980586669805944
5136316980608369806201
63211226980796069808450

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3497484Full LengthBC002126gamma-aminobutyric acid receptor associated protein
4459651Full LengthBC024621gamma-aminobutyric acid receptor associated protein
5102114Full LengthBC030350gamma-aminobutyric acid receptor associated protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062723  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019749 NP_062723 Q9DCD6 MAP1_LC3

Related Sequences

 
mRNAGenPeptSwissProt
AF161587 AAD47642 Q9DCD6
BC002126 AAH02126 Q9DCD6
BC024621 AAH24621 Q9DCD6
BC030350 AAH30350 Q9DCD6
AK002879 BAB22426 Q9DCD6
AK011731 BAB27806 Q9DCD6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gabarap NP_062723 H.sapiens GABARAP 11337 Gene Info NP_009209 100
R.norvegicus Gabarap 58974   NP_742033 100
A.gambiae AgaP_AGAP002685 1273277   XP_312238 91
D.melanogaster Atg8a 32001   NP_727447 91
C.elegans lgg-1 174050   NP_495277 84
N.crassa NCU01545 3872408   XP_956248 59
A.thaliana ATG8D 815112   NP_178631 58
S.pombe atg8 2541386   NP_596531 56
S.cerevisiae ATG8 852200   NP_009475 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta