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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Opn4, opsin 4 (melanopsin)
Sequence ID:NM_001128599
NM_013887
Entrez Gene ID:30044
Ensembl ID:ENSMUSG00000021799

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 B|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 34592361 - 34600142

 Exon Info From UCSC:
NM_001128599
NM_013887

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40142922Full LengthBC139827opsin 4 (melanopsin)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038915  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001128599 NP_001122071    
NM_013887 NP_038915 Q9QXZ9 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
AF147789 AAF24979 Q9QXZ9
BC139827 AAI39828 A4QPG3
DQ278263 ABB91432 A9NIH9
EU303117 ACA01962 B2C712
EU303118 ACA01963 A4QPG3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Opn4 NP_001122071 R.norvegicus Opn4 192223   NP_620215 94
H.sapiens OPN4 94233 Gene Info NP_001025186 81
A.gambiae GPROP3 4577364   XP_001238570 41
A.gambiae GPROP1 4577354   XP_001238567 41
A.gambiae GPROP6 1282006   XP_322000 39
D.melanogaster Rh6 41889   NP_524368 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)