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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rab1, RAB1, member RAS oncogene family
Sequence ID:NM_008996
Entrez Gene ID:19324
Ensembl ID:ENSMUSG00000020149

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 A3.1|11 10.9 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 20201629 - 20224845

NM_008996 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1512010160420101654
521242011563220115704
1252202011881520118910
2213162012308620123181
3174482012436920124500
44926572012465020126858

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3592802Full LengthBC002077RAB1, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033022  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008996 NP_033022 P62821 Ras

Related Sequences

 
mRNAGenPeptSwissProt
AF226873 AAF33844 P62821
BC002077 AAH02077 P62821
AK034408 BAC28697 P62821
AK129477 BAC98287 Q6ZPF0
AK151085 BAE30098 Q3UB66
AK159425 BAE35072 P62821
AK166249 BAE38660 P62821
AK167150 BAE39292 P62821
AB232583 BAF02845 Q0PD67
Y00094 CAA68284 P62821

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rab1 NP_033022 H.sapiens RAB1A 5861 Gene Info NP_004152 100
R.norvegicus Rab1 81754   NP_112352 100
D.melanogaster Rab1 42524   NP_732610 85
N.crassa NCU08477 3879294   XP_963146 82
A.gambiae AgaP_AGAP004146 1273973   XP_313029 81
A.thaliana RAB1C 827468   NP_193486 81
A.thaliana RAB1A 834766   NP_568678 81
C.elegans rab-1 178620   NP_503397 80
S.pombe ypt1 2539784   NP_596205 80
S.cerevisiae YPT1 850505   NP_116615 72
P.falciparum Rab1b 812940   XP_001351683 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta