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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Snx1, sorting nexin 1
Sequence ID:NM_019727
Entrez Gene ID:56440
Ensembl ID:ENSMUSG00000032382

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 D|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 66088138 - 66124826

 Exon Info From UCSC:
NM_019727

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6807363Full LengthBC066044sorting nexin 1
30471747Full LengthBC066189sorting nexin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062701  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019727 NP_062701 Q6NZD2 PX
Sorting_nexin

Related Sequences

 
mRNAGenPeptSwissProt
AF154120 AAD38805 Q9WV80
BC066044 AAH66044 Q6NZD2
BC066189 AAH66189 Q6NZD2
AB019214 BAB20283 Q9WV80
AK149850 BAE29122 Q3UDY9
AK154079 BAE32360 Q3U4S1
AK155746 BAE33413 Q6NZD2
AK161241 BAE36261 Q6NZD2
AK167177 BAE39312 Q6NZD2
AK167993 BAE39983 Q3TI63
AK168742 BAE40583 Q6NZD2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snx1 NP_062701 R.norvegicus Snx1 84471   NP_445863 99
H.sapiens SNX1 6642 Gene Info NP_003090 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)