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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lrp1, low density lipoprotein receptor-related protein 1
Sequence ID:NM_008512
Entrez Gene ID:16971
Ensembl ID:ENSMUSG00000040249

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10|10 B2-D1

Chromosomal Position (from UCSC)

Chromosomal Position:10: 127538190 - 127621119

 Exon Info From UCSC:
NM_008512

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5052206IncompleteBC043675low density lipoprotein receptor-related protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032538  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008512 NP_032538   EGF
Ldl_recept_a
Ldl_recept_b
EGF_CA

Related Sequences

 
mRNAGenPeptSwissProt
BC043675 AAH43675 Q811K6
AF367720 AAL09566 Q91ZX7
AK081134 BAC38143 Q8C4T5
AK153375 BAE31943 Q3U5J2
AK153549 BAE32086 Q3U5J2
AK154429 BAE32580 Q3U454
X67469 CAA47817 Q91ZX7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lrp1 NP_032538 R.norvegicus Lrp1 299858   XP_243524 99
H.sapiens LRP1 4035 Gene Info NP_002323 98
A.gambiae AgaP_AGAP012372 1280340   XP_320185 41
D.melanogaster LRP1 35799   NP_788284 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)