Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cd40, CD40 antigen
Sequence ID:NM_011611
NM_170702
NM_170703
NM_170704
NR_027852
Entrez Gene ID:21939
Ensembl ID:ENSMUSG00000017652

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H3|2 97.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 165055700 - 165071001

 Exon Info From UCSC:
NM_011611
NM_170702
NM_170703
NM_170704

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4018221Full LengthBC029254CD40 antigen

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_733805  NP_035741  NP_733804  NP_733803  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011611 NP_035741 P27512 TNFR_c6
NM_170702 NP_733803   TNFR_c6
NM_170703 NP_733804   TNFR_c6
NM_170704 NP_733805   TNFR_c6

Related Sequences

 
mRNAGenPeptSwissProt
M83312 AAB08705 P27512
BC029254 AAH29254 P27512
AK089861 BAC40978 P27512
AK150959 BAE29991 P27512
AK152716 BAE31440 P27512
AK152756 BAE31471 P27512
AK152942 BAE31613 P27512
AK156644 BAE33789 P27512
AK161978 BAE36663 P27512
AK162305 BAE36843 P27512
AJ401387 CAC29427 P27512
AJ401388 CAC29428 P27512
AJ401389 CAC29429 P27512
AJ401390 CAC29430 P27512
CT010343 CAJ18551 P27512

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cd40 NP_035741 R.norvegicus Cd40 171369   NP_599187 85
H.sapiens CD40 958 Gene Info NP_001241 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta