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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Matn1, matrilin 1, cartilage matrix protein
Sequence ID:NM_010769
Entrez Gene ID:17180
Ensembl ID:ENSMUSG00000040533

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.3|4 61.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 130944384 - 130955466

NM_010769 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1145130500299130500443
146492130501743130502089
493715130505849130506071
716841130507203130507328
8421258130507753130508169
12591411130508747130508899
14121492130510250130510330
14932002130510881130511390

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6315509Full LengthBC047140matrilin 1, cartilage matrix protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034899  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010769 NP_034899 P51942 EGF
VWA

Related Sequences

 
mRNAGenPeptSwissProt
U35035 AAB06521 P51942
BC047140 AAH47140 P51942

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Matn1 NP_034899 R.norvegicus Matn1 297894   NP_001006980 96
H.sapiens MATN1 4146 Gene Info NP_002370 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)